BtaEX0041204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14067659-14071979:-
Coord C1 exon
chrX:14071865-14071979
Coord A exon
chrX:14067912-14068073
Coord C2 exon
chrX:14067659-14067768
Length
162 bp
Sequences
Splice sites
3' ss Seq
CACTATTTTAATCATTATAGGTC
3' ss Score
7.81
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATTTTGCAAAGAATTCATCACAAGTTGGGTTAGATGAGTCTTCAGACTTACCATTCTCCTGGAGCCAGAATACAGTACCACTGTCCCAAGATGGATCAACAATTTATATAGAAG
Seq A exon
GTCTAGATGAAACTCTGCCTAAAATAAAACATTCTGACATTATTAAAATAATCACTGTTAATCCAAAGACCAGCGAAAGTGTTTCTGAAATAAATCCTTGTGCTTCACTGTCTTTAACTAATTGTTCTTCAGCAACATCTTCTTATCTCATGTGGTCAAAAG
Seq C2 exon
GTACACATACCTTATCAACTGCCACTAGAACTGGAACATTTTTTGTAAGAGCTTGTCCGAAGTGCAATGTTCAGTTCAATCTTTTGGATCCTTTGAAATACCACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(21.6=100)
A:
PF138361=DUF4195=FE(30.7=100)
C2:
PF138361=DUF4195=PD(3.4=16.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGAATTCATCACAAGTTGGG
R:
TCATGTGGTATTTCAAAGGATCCA
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development