HsaEX6053318 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129370188-129373667:-
Coord C1 exon
chrX:129373556-129373667
Coord A exon
chrX:129370443-129370613
Coord C2 exon
chrX:129370188-129370294
Length
171 bp
Sequences
Splice sites
3' ss Seq
CACTATTTAAATCTTTGTAGGTA
3' ss Score
7.53
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATTTTACAAAGAATTCACAAGTTGGATCGGATAATTCTTCAATTTTACTGTTTGACTCGACCCAGGAATCACTACCACCATCCCAAGACATACCAGCAATTTTTAGAGAAG
Seq A exon
GTATGAAAAATACTTCATATGTGTTGAAACATCCTTCTACTTCTAAAGTAAACAGTGTTACTCCAAAAAAACCAAAGACCAGTGAAGATGTTCCTCAGATAAATCCCTCCACTTCATTGCCTTTAATTGGCTCTCCTCCAGTGACATCCTCCCAAGTTATGCTGTCAAAAG
Seq C2 exon
GTACAAATACCTCATCTCCATATGATGCTGGAGCAGATTACCTAAGAGCTTGTCCAAAGTGCAATGTTCAGTTCAATCTTTTGGATCCTTTGAAATACCACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.810 C2=0.083
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(20.2=100)
A:
PF138361=DUF4195=FE(31.1=100)
C2:
PF138361=DUF4195=PD(3.3=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAATTCACAAGTTGGATCGG
R:
TCATGTGGTATTTCAAAGGATCCA
Band lengths:
211-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)