RnoEX6026991 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135398600-135406506:-
Coord C1 exon
chrX:135406401-135406506
Coord A exon
chrX:135398841-135399005
Coord C2 exon
chrX:135398600-135398709
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTCAAATCATTGTAGGTG
3' ss Score
6.93
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCTTTTTAAAGACTTCACCACAAGATGATTCAGGTGCTTCTTCTGCCTCACTGTTAGACTCAACCAAGGATATACCGTCCTCCAACGTACTGCAAAAGAGTACAG
Seq A exon
GTGTCAATCAAACTTTACGATTAAAACATCCTTCCTCATCCAAAGTAAACAGTGTTAATCCAAAGAAGCCAAAGACTAATGCAAGCATTTCTGAAACAGGCCGTGGCTCAGCATCATCTTTAAACATGTCTCCTTCCGAGGCTTCTTCCCAGGTTGTACTATCAA
Seq C2 exon
ATATGAATACCTCATCAATTCAGTCTGCAGCCGGAAAACCTTCACTACGATCTTGTCCAAAGTGCAATGTTAAGTTCAGTCTTTTGGATCCTTTGAAGTGCCACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'10-12,'10-9,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.982 C2=0.162
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(19.6=100)
A:
PF138361=DUF4195=FE(30.7=100)
C2:
PF138361=DUF4195=PD(3.9=18.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTTAAAGACTTCACCACAAGA
R:
TGTGGCACTTCAAAGGATCCA
Band lengths:
211-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]