MmuEX6044260 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48566708-48569226:-
Coord C1 exon
chrX:48569121-48569226
Coord A exon
chrX:48566949-48567113
Coord C2 exon
chrX:48566708-48566817
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCAAATCATTGTAGGTG
3' ss Score
8.05
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GACTTTACCAAGACTTCACCCCAAGAGGATTCCGGTGCTTGTTCGGTCTCACAGTCAGACTCGACCCAAGATATACCGTCTTCCAACATACTGCAACCGAGGACAG
Seq A exon
GTGTCGATCAAACTTTAGGATTAAAACATCCTTCCACTTCCAAAGTAAACAGTGTTAATCCAAAAAAGCCAAAGACGAGTGCGAGCATTTCTGAAACACGCCCTTGCTCTTCATCATCTTCACAGACGGCGCCTTCAGGGGCTTCTTCCCAAACTGTACTATCAA
Seq C2 exon
ATGTGAATACCTCATCAGTTCAGTCTGCACCTGGATCATCTTCACTAAGATCTTGTCCAAAGTGCAATGTTAAGTTCCGACTTCTGGATCCTTTGAAGTGCCACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'16-23,'16-22,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.270
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(19.6=100)
A:
PF138361=DUF4195=FE(30.7=100)
C2:
PF138361=DUF4195=PD(3.9=18.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTACCAAGACTTCACCCCA
R:
TGTGGCACTTCAAAGGATCCA
Band lengths:
210-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types