BtaEX0041211 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53791584-53793855:+
Coord C1 exon
chr10:53791584-53791718
Coord A exon
chr10:53792302-53792413
Coord C2 exon
chr10:53793548-53793855
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTCTTTATATACAGTCA
3' ss Score
5.94
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
AAAAAGGGAATACACCGTTGTACAAAATGCAGACTGCAATTTTTAACATGCAAAGAGAAAATGGATCACAAGACTCAGCATCATCGGACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
TCAGCTCTTGAATATTTGCTCCAGTGGAGGGAAACAGAGGCATGGATAATCCAAAGTGAAATAATCCCCAAAACATTTATATTTGGCTTTGGGTACTTACCTTTGAATGTGG
Seq C2 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAATCAGGATCTTCAACCACACCTTCCATTAGTGCAAGCACTTCTACCCTTCAGCTCTCACCTCCGAGGACTAAAAATATAACTGCTAAAAGTCCCACAAAATCCAACACAAGTAAACCTAATATAACTAAATCCATTGCAAGTAAACCTAATGCAAGTAAGCCTAATGGAAATAAACCTAAATACAAATCAAAAATATCTAATCTGCAGAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000001949fB7986
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGTACAAAATGCAGACTGC
R:
TGGATTTTGTGGGACTTTTAGCAGT
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development