HsaEX0073337 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56666679-56668957:-
Coord C1 exon
chr15:56668823-56668957
Coord A exon
chr15:56667997-56668241
Coord C2 exon
chr15:56666679-56666986
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTCTTTATATACAGTCA
3' ss Score
5.94
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAAAAAGGAATACATCGTTGTACAAAATGCAGGCTGCAGTTTTTGACATGCAAGGAGAAAATGGATCATAAGACTCAACACCATCGAACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
TCAGCTCTTGAATATTTGCTCCAGTGGAGGGAAACAGAGGCATGGATAATCCAAAGTGAATAATCCCCAAAACATTTATTTTTGGCTTTGGGTACTTTCCTTTGAATGTGGGTATGTCTGTTATTTGAATTAACTAAAACAATATAAAGCCATGCTCTGAAGACATGATAGCAAGAGAAGCTATCCAGCATCCTTCCCTGCAATCCATTCATTCCATGTTGGGACTAGACATGCAGAACACTAAT
Seq C2 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTGCAATCAGGAGCTTCACCTACACCTTCCATTAGTGCAAGTGCTTCTACCCTTCAGCTCTCACCTCCAAGGACTAAAAATATAACTGCTAAAAATCCTGCAAAATCTAATACAAGTAAACCTAATACAGTCAAATCCAACGCAAGTAAACCTAATACAAGTAAGCCTAATGGAAGTAAATCTAAATACAAACCAAAAATCTCTAATATGCAAAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.000 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTACAAAATGCAGGCTGC
R:
ACTTGCGTTGGATTTGACTGT
Band lengths:
294-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development