MmuEX0053176 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72329028-72331173:+
Coord C1 exon
chr9:72329028-72329162
Coord A exon
chr9:72329709-72329953
Coord C2 exon
chr9:72330866-72331173
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTGACCTCTTTATATACAGTCA
3' ss Score
6.32
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAGTTTTTGACATGCAAGGAAAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTGGAAGGACTTCCCCCTGGAACAAAA
Seq A exon
TCAGCTCTTGAATATTTGCTCCAGTGGAGGGAAAACAGAGGCATGGATAATCCAAAGTGAAACAATACCCAAAACATTTATATTTGCCTTTGGGTACTTACCTTTGAATGTGGGTATGTCTTTTATTTGAATTGACTAAATAATATAAAGCCATGCTCTGAAGACTTAGAGCAAGAGGAGCTAGCCAGCATCCTTCCCTGCAGTCCATTCATTTCATGCTGGGACTACACATGCAGAATACTAAT
Seq C2 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAGTCAGGATCTTCAGTTACACCTTCTATCAGCCCAAGCACTTCTACCCTCCAGCTCTCACCTCCAGAGCCTGACAATGTAACTGCTAAAAATCACGTGAAGTTGACTACAAGTACACCAAACACAACCATATCTGACCCCAGTAAAGCTAATGAGACCAAGTCTAATGGCAGTAAATCTAAAAACAAGTCAAAAGTCTCCAACATGCAGAAGAAACAAAGCACATTGTCTAGTAGTAATAAAAAAAGCAAAGTAAACACAGCACTAAGGAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.387 A=0.211 C2=0.965
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAAGCAACTGGAAGGAC
R:
TGTGCTTTGTTTCTTCTGCATGT
Band lengths:
293-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types