RnoEX0101212 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78908446-78910588:+
Coord C1 exon
chr8:78908446-78908580
Coord A exon
chr8:78909133-78909376
Coord C2 exon
chr8:78910281-78910588
Length
244 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTCTTTATATACAGTCA
3' ss Score
5.94
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAATTTTTGACATGCAAAGAGAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTAGAAGGACTGCCCCCTGGAACAAAA
Seq A exon
TCAGCTCTTGAATATTTGCTCCAGTGGAGGGAAACAGAGGCATGGATAATCCAAACTGAAACAATCCCCAAAACATTTATATTTGCCTTTGGGTACTTACCTTTGAATGTGGGTATGTCTTTTATTTGCATTGACTAAATAATATAAAACCATGCTCTGAAGACTTAGAGCAAGAGGAGCTAGCCAGCATCCTTCCCTGCAACCCATTCATTTCATGCTGGGACTACACATGCAGAATATTAAT
Seq C2 exon
GTTACTATTCGAGCTTCCGTTGCACCTCTTCAATCGGGATCTTCAGTTACACCTTCTATCAGTGCAAGCACTTCTACCCTCCAGCTCTCACCTCCAAGGACTGAAAATGTAACTGCTAAAAATCACGTGAAACTGAATACAAGTACACCAAATACAACCATATCTGATCCCAGTAAAACTAATGAGATCAAGTCTAATGGAAGTAAATCTAAAAACAGGTCAAAAGTCTCCAATATGCAGAAGAAACAAAGCACATTGTCTAATAGTAATAAAAAAAGTAAAGTGAACACAGCACTAAGAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX2-5/14=3-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000089335fB16905
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAACTAGAAGGACTGCCC
R:
ACAATGTGCTTTGTTTCTTCTGCA
Band lengths:
292-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]