BtaEX0041230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003953 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr25:39006993-39008878:+
Coord C1 exon
chr25:39006993-39007275
Coord A exon
chr25:39007485-39007603
Coord C2 exon
chr25:39008752-39008878
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCAAGAGTCTCTCCGCTCAGCCC
3' ss Score
1.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGCAGCCCCTCGCACGACTCCAGACTCGCCCGCCGCCCAGCTGGAGAGGCTGGACGGATCGGAGTGTGGTCCTGACCAGGAGGAAGAAGAGGAGGAAGGAAAGGGGGACCAGGTGGAGGCGCTGGAGGAGCGGCTGGCGGAGGAGGTGGTGGTGGACGCAGATGTGGAGGTGGACGCCACGGTGGAGGCGGCGCTGGCAGGAGAGCAGAGTCCAGCGTCGGGGACCCAGGAGTGCCCCCACGGCGGCAGGGACACCGAGTCACCGGGCCTTCAGGAAAAGG
Seq A exon
CCCTGCAGGCCTTCCGGGCTCCAGCCACGCCGAGGGATGAGGACCTGGAGCGGGAGGGGGAGGGGGACGAAGAGGAGGAGGACGAGGACGAGGTCGACTCCCTGACGTCTGGGTCTCAG
Seq C2 exon
GGGCTGGTGACCTTTGAAGACGTGGCTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGACGCAGAGCAGCGGGAGCTCTACAAGGAGGTCATGCGGGAAAACTATGGGATCCTGGTGTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003953_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAGGAAGAAGAGGAGG
R:
TCCAGGGAGAAGTACACAGCC
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development