RnoEX6063499 @ rn6
Exon Skipping
Gene
ENSRNOG00000001094 | Zfp316
Description
zinc finger protein 316 [Source:RGD Symbol;Acc:1311647]
Coordinates
chr12:13353750-13355064:+
Coord C1 exon
chr12:13353750-13354101
Coord A exon
chr12:13354246-13354337
Coord C2 exon
chr12:13354938-13355064
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGAGCATTCTTCCTTTCAGCCC
3' ss Score
7.31
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGATGGCTGCCCTTCATACTGCTCCAGACTCCCCAGATACCCAACTGGAGCCAGCAGAAGATGGCTCGGAATGTGATGCTGAGCCCGAGGAGGAAGAGGAAGAAGAAGAGGAAGATGACGAGCAGGGGAGAGAGGAGGAAGAGGTAGTAGTAGAAGAGGAAGTGGCCACACAGGTGCAGGAGGCGGCGGGAGTGGAAGTGGAGGCCAACTCAGCGGACACTGGTGGTGGCGATGATGGCGATGACGGTGATGTGGAGGAGGTGCTGGCAGAGGAGCAGACTCTGAGCTTAGGGACCCAGAAGCGGCTTAGCAATGGTGCTGATGCCAAGTCACCAGCTCTTCAAGGAAAAG
Seq A exon
CCCTGCAGGCCTCCCGGCTGCCTCCCACTACTCAGGGTGACGATCCAGAGGAAGAGGAGGAAGAGGAAGATGACGAGCATTTCCTGACTCAG
Seq C2 exon
GGCCTGGTGACTTTTGAAGATGTGGCTGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGATGTGGACCAACGGGACCTCTATCGGGATGTGATGCAGGAAAACTATGGGATCCTGGTTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001094-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGCGATGACGGTGATG
R:
CCTCTCCCACTCCTCCAAAGA
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]