MmuEX6022313 @ mm10
Exon Skipping
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:143263296-143264681:-
Coord C1 exon
chr5:143264293-143264681
Coord A exon
chr5:143264051-143264142
Coord C2 exon
chr5:143263296-143263422
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTAAGCCGTCTTCCTTTTAGCCC
3' ss Score
6.79
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCATACGGAGGCTCTCTCCCAGGGATGATGGCTGCCCTTCAGAGTGCTCCAGACTCCCCAGCTACCCAGCTGGAGCCAGCAGAAGATGGGTCAGAATGTGATGCTGACCCCGAGGAGGAGGAGGAGGAGGAGCAGCAGGAGGAGGAGGATGAAGAAGAGGAGGAAGAGGTAGTAGTAGAAGAAGTGGCCACACCGGTGCAGGAGGTGGCAGAAGTAGAGGTGGAAGCCAACTCAGCAGACAATGGTGGAGGTGATGATGATGATGATGGTGGTGGTGGTGATGATGACGTGGAGGAGGTCCTGGCAGAGGAGCAGACTCTGAGCTTAGGGACCCAGGAGCGGCATAGCAATGGTGGTCATGCCAAGGCACCAGTTCTTCAAGGAAAAG
Seq A exon
CCCTACAGACCTCCCGGGTATCTCCCACTACTCAGGATGAAGATGTGGAGGAAGAAGAGGAAGAGGAAGATGAGGAGCATTTCCTGACCCAG
Seq C2 exon
GGCCTGGTGACTTTTGAAGATGTGGCCGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGGTGTGGACCAGCGGGATCTGTACCGGGAAGTAATGCAGGAGAACTATGGGATCCTGGTCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658-'9-9,'9-6,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATAGCAATGGTGGTCAT
R:
CCAAGGAGACCAGGATCCCAT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types