MmuEX6022313 @ mm9
Exon Skipping
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:144024975-144026360:-
Coord C1 exon
chr5:144025972-144026360
Coord A exon
chr5:144025730-144025821
Coord C2 exon
chr5:144024975-144025101
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTAAGCCGTCTTCCTTTTAGCCC
3' ss Score
6.79
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCATACGGAGGCTCTCTCCCAGGGATGATGGCTGCCCTTCAGAGTGCTCCAGACTCCCCAGCTACCCAGCTGGAGCCAGCAGAAGATGGGTCAGAATGTGATGCTGACCCCGAGGAGGAGGAGGAGGAGGAGCAGCAGGAGGAGGAGGATGAAGAAGAGGAGGAAGAGGTAGTAGTAGAAGAAGTGGCCACACCGGTGCAGGAGGTGGCAGAAGTAGAGGTGGAAGCCAACTCAGCAGACAATGGTGGAGGTGATGATGATGATGATGGTGGTGGTGGTGATGATGACGTGGAGGAGGTCCTGGCAGAGGAGCAGACTCTGAGCTTAGGGACCCAGGAGCGGCATAGCAATGGTGGTCATGCCAAGGCACCAGTTCTTCAAGGAAAAG
Seq A exon
CCCTACAGACCTCCCGGGTATCTCCCACTACTCAGGATGAAGATGTGGAGGAAGAAGAGGAAGAGGAAGATGAGGAGCATTTCCTGACCCAG
Seq C2 exon
GGCCTGGTGACTTTTGAAGATGTGGCCGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGGTGTGGACCAGCGGGATCTGTACCGGGAAGTAATGCAGGAGAACTATGGGATCCTGGTCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATAGCAATGGTGGTCAT
R:
CCAAGGAGACCAGGATCCCAT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: