BtaEX0041256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47834232-47838863:-
Coord C1 exon
chr18:47838772-47838863
Coord A exon
chr18:47835716-47835842
Coord C2 exon
chr18:47834232-47834311
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGGGTTTGTCATTTCAGGAT
3' ss Score
7
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTTTGGCTTCTGTCTGTGGACTCTGCTTCTTCAGTAAATGACCCTTGAGAAAAACTAAACATTTTCTTGCAACTCTGAAATCATGGCTCAT
Seq A exon
GATTTGGTGATGTTCAGAGATGTGACTGTGGACTTTTCTCAGGAAGAGTGGGAATGCCTGAACTCAAATCAGAGGAATTTATACAGAGATGTGATATTAGAGAATTATAGCAACTTGGTGTCACTGG
Seq C2 exon
GAGGATGTTCCATTTCTAAGCCAGATGTAATTACTCTGTTAGAGCAAGGGAAAGAACCCTGGATGGTTGTGAGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGCTTCTGTCTGTGGACT
R:
CATCCCTCACAACCATCCAGG
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development