HsaEX6094740 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:37643265-37647899:-
Coord C1 exon
chr19:37647814-37647899
Coord A exon
chr19:37644610-37644736
Coord C2 exon
chr19:37643265-37643363
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGCGTTTATCATTTCAGGAT
3' ss Score
9.96
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CTCTGGTGTCTGTGGACCCTGCTTCTGAAGTACATGAACCTTGAGGAAAATTGACCAGTTCTAGCAGTTCTAAAATCATGGCTCGT
Seq A exon
GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG
Seq C2 exon
CAGGATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGGGATGAGAAAAGAAGATGGACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784-'19-25,'19-24,21-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGTGTCTGTGGACCCTG
R:
CCATCTTCTTTTCTCATCCCTCACA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains