HsaEX6094740 @ hg19
Exon Skipping
Gene
ENSG00000120784 | ZFP30
Description
zinc finger protein 30 homolog (mouse) [Source:HGNC Symbol;Acc:29555]
Coordinates
chr19:38134166-38138800:-
Coord C1 exon
chr19:38138715-38138800
Coord A exon
chr19:38135511-38135637
Coord C2 exon
chr19:38134166-38134264
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGCGTTTATCATTTCAGGAT
3' ss Score
9.96
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CTCTGGTGTCTGTGGACCCTGCTTCTGAAGTACATGAACCTTGAGGAAAATTGACCAGTTCTAGCAGTTCTAAAATCATGGCTCGT
Seq A exon
GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG
Seq C2 exon
CAGGATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGGGATGAGAAAAGAAGATGGACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGTGTCTGTGGACCCTG
R:
CCATCTTCTTTTCTCATCCCTCACA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)