MmuEX0053209 @ mm10
Exon Skipping
Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:29786219-29789436:+
Coord C1 exon
chr7:29786219-29786303
Coord A exon
chr7:29788049-29788175
Coord C2 exon
chr7:29789341-29789436
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACACCGGCTTGTCATTGCAGAGT
3' ss Score
6.9
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CTCTAGCCTCTGTGAACGGCTTCACCAGGACATGATCCTCGAGGAAGAACAAGCCAGTTCTTGCGATTCTGGAATCATGGCTCAT
Seq A exon
AGTACGGTGATGTTCAGAGATGTGGCTGTGGGCTTTTCTCAGGAAGAGTGGGAGTGCCTGAGTGCCTACGAGAGGGATCTGTACAGAGATGTGATGCTAGAGAACTACAGCCACTTGGTGTCACTGG
Seq C2 exon
GATGTTCCATTTCTAAGCCAGATGTGATCACCCTGTTGGAACAAGGGAAGGAGCCGTGGATGATTGTGAGGGCTGAGAAGAGAAGGTGGAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGCCTCTGTGAACGGCTT
R:
TCGGCTCCACCTTCTCTTCTC
Band lengths:
179-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types