BtaEX0041325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038534 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr18:65907570-65908617:+
Coord C1 exon
chr18:65907570-65907937
Coord A exon
chr18:65908013-65908214
Coord C2 exon
chr18:65908523-65908617
Length
202 bp
Sequences
Splice sites
3' ss Seq
GACCCTCCCTCCCCCCTCAGATT
3' ss Score
12.1
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTGGCTCCAGGAAGATTCCCCGCACAATGCCATCCCCACTGGGTCCCCCAAATCTGCCTTCTCTGGACCCGGAGGCCATCCCAGAGAATCCTGAGACGGCACGCCAGCGCTTCCGGGGCTTCTGTTACCAGGAGGTGGCTGGTCCCCGGGTGGCTCTGGCCCGGCTGCAGTTTCTGTGCCACCAGTGGTTACAGCCCGAGGCGCACTCCAAGGAGCAGATACTAGACCTGCTGGTGCTGGAGCAGTTCCTGGGGGCGCTGCCCCCTGAGATTCAGGCCTGGGTGCGGGGCCAGCAGCCAGGCAGCCCTGAGGAGGCGGTTGTCCTGGTCGAAGACCTGCAGCGTGACCCTGGGCAGCTGCTGGGTTGG
Seq A exon
ATTACAGCACATGTCCTACAGCAAGCTGTGCTCCCAGCCACGCAGAAGACAGAGGAGTTGGTGGGGGGTGTCCACCCCTCAGGGACAGTGGAGCCCCTCAGGGCAGCCTCTGGGGAGGGGCCAAAGGATGCCCAGATGGAGGGCAATGCCCAGCTCAGCTGCAGCGTGAAGGAGGAGCCTGATGGCTACATGCAGGAGATAG
Seq C2 exon
CATCCTCCAGCCCCCCACCTCCAGCCCAGTCCCACAAGGAGCACGTCGAACAACAGGAACCGACCTCCGCACCCTTCCAGCCACCCCGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038534_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.779 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=76.4)
A:
NO
C2:
PF0135222=KRAB=PU(6.5=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTTCTGTTACCAGGAGG
R:
TTGTTCGACGTGCTCCTTGTG
Band lengths:
307-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development