MmuEX0053344 @ mm10
Exon Skipping
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12978998-12979979:+
Coord C1 exon
chr7:12978998-12979378
Coord A exon
chr7:12979451-12979646
Coord C2 exon
chr7:12979885-12979979
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGTGACATGATTCTCTTCAGATC
3' ss Score
7.99
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTCCCTCTGTCACCTCCAAAAAGACCCTTCAAAACAAGAATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCTTCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATTTTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCCCCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGG
Seq A exon
ATCACAGCCCACATCCTGAAGCCAAAGATGCTTCCTCTAGTCCAGAAGGAGTCCTCAGGGAGTCACCACATCTCAGCAGCAACGGAGTCCTCCAAGGCAGGCCTTGCGGAGGCACCGCTGAAGGCCGGGATAGATCGATCTACCCAGATCAGTTGCAGTGTGAAGGAGGAAGTCAGTGCTGATGGGCAGGAGATGG
Seq C2 exon
TATCTCCAAGTGCCCTCCTTTCAACCCAGGATTCCGAGGGACATCTTGAACATCAGGAAACGGTCTCCATATCCTTCCAAACAGGAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961-'5-7,'5-3,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.475 C2=0.684
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=73.2)
A:
NO
C2:
PF0135222=KRAB=PU(23.7=28.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCTTCGAGAGTTGTGTC
R:
AGATGTCCCTCGGAATCCTGG
Band lengths:
255-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types