RnoEX0001234 @ rn6
Exon Skipping
Gene
ENSRNOG00000060429 | AABR07002065.2
Description
NA
Coordinates
chr1:65599860-65600888:-
Coord C1 exon
chr1:65600505-65600888
Coord A exon
chr1:65600231-65600432
Coord C2 exon
chr1:65599860-65599954
Length
202 bp
Sequences
Splice sites
3' ss Seq
TGTAACATGCTTCTCTTCAGATC
3' ss Score
8.63
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTAGGACCCTCTGTCACCTCCAAAAAGACCCTCAAAACAAGAATGCCATCTCCTCTGGGTACCCCACACCTATCCTTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCATTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCATTGGCCCGGCTTCGAGAGTTGTGTCACCAGTGGTTGCAGCCTGAGTCATCCTCCAAAGAGCAGATGATAGAGTTGCTGGTTTTGGAACAGTTCCTGGGTGTGTTGCCTCCTGAGATCCAGGCCTGGGTTCGAGGACAGCGACCAGGAAGCCCCGAGGAGGCCGCTGCCCTTGTTGAGGAGCTGCAGCATGATCCTGGACAGCTGCTGGGCTGG
Seq A exon
ATCACAGCCCACATCCTGAAGCCAAAGATACTTCCTTCAGTCCAGAAGATGGAGGAGTCCTCAGGGAGCCACCACATCTCAGCAGCAATGGAATCCTCCAAGGCAGGCCCAGCGGAGGCACCGCAGGACGCAGGGATAGACAGATCTACCCAGATCAGTTGCAGTGTGAAGGAGGAAGTCAGTGCTGATGGGCAGGAGATGG
Seq C2 exon
TATCTCCAAGCACCCTCCTTCCAGCCCAGGGCCCTGAGGGACATCTTGAACATCAGGAAACAGCCTCCGTATCGTTCCAGCCAGGAAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060429_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.799 C2=0.854
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=82.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGTTTCTGCTATGAGGA
R:
GTTCAAGATGTCCCTCAGGGC
Band lengths:
307-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]