BtaEX0041356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014123 | ZNF507
Description
Bos taurus zinc finger protein 507 (ZNF507), mRNA. [Source:RefSeq mRNA;Acc:NM_001206198]
Coordinates
chr18:43029986-43040681:+
Coord C1 exon
chr18:43029986-43030276
Coord A exon
chr18:43031739-43031832
Coord C2 exon
chr18:43038544-43040681
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTTTCATTCTTGGCTACAGCTG
3' ss Score
7.32
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GAGTGGCATCGCCTTCGCGCCCGCCCAGCCCCAGGACCCGGGATGCCCATGGGCGGGGCCTGAGCATCGCCCCGCCCTCGCCGCCCGCCACTCGGGTCACCTGACCTACCCGCAGCTCACGTGATCCGTCCCCAGCGCCGCCATTTTGGAGCTCCTGATGAGGATGGGGAAAGCGGCGTAAAAGAGGGAAAAGAGCCGTGAGAGAGTTGGGCGAGGACGAGGGCGAGGGCACGGCCGGCTCCTGGCCGGCAAAGGAGGCTCGCGGAAGCAGCAGCCGCCGCCCGACCGCAG
Seq A exon
CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG
Seq C2 exon
ATATGGAAGAAGGCAGCAGTGTTGCCATGTTGGTGTCAGATATTGGGGAACAGGAAGCTATGTTGACTGCCAAAACTGTCATCAGTTCATCACTGGAAATTGATGAACAAAGAAAAGCTAAAACAGATCCATTAATCCATGTTATCCAGAAGTTAAGCAAGATAGTGGAACATGAAAAGTCACAAAAATGTCTTTTAATTGGCAAAAAACGGCCACGTTCTAGTGCTGCAGCACACTCTCTTCTTGAAAGTCAAGAATCTTGTGAGATTCCAGCTAAAGTAACCCAGTCACCTGCTACTGATATTAGAAGGGCTGAGATGTCTCAAATACATTTTACCCCTGACTCTCCTGCCCAGAGTGATGGGAAGGCTATGTCTTACCAGTGTAGCCTTTGTAAGTTTCTGTCATCATCTTTTTCTGTGTTAAAAGATCATATCAAGCAGCACGGTCAGCAGAATGAAGTGATATTAATGTGCGCAGAGTGCCATATTACATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014123_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.303
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATTTTGGAGCTCCTGAT
R:
CAACACTGCTGCCTTCTTCCA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development