RnoEX0101440 @ rn6
Exon Skipping
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92110491-92119951:-
Coord C1 exon
chr1:92119807-92119951
Coord A exon
chr1:92118421-92118511
Coord C2 exon
chr1:92110491-92112574
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCTTCTTGGCCACAGCTG
3' ss Score
8.28
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTTGGAGCCACGGCCGAGGAGGGGGCAAAAAGGGGAAAAGAGAGGGAAAAGAGTCGGGAGCGAGGCGGACGAGGGTAAGGGGACGGCGGGGTCCCGGCCAGCCAAAGGAGGCTCGCAGAAGCGGCAGCCCGCCGCCCTACCGCAG
Seq A exon
CTGGATTGTGAATATTGATCCAGGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACAGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGCTGACCAACAAAGAAAACCTAAAGCAGATCCATTGGTCCATGTCATCCAGAAGTTAAGCAAGATAGTGGGGCACGAAAAGTCACAAAAATGTCTTCTGATTGGGAAAAAGCGCCAACGCCCAAGTGAGATACCACACTCTCTTGAGAGGGTAGAGAACTGTGAGATCCCAGCTAAAGCAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAAGCCGAGATGTCACAGGCCTGTCCCACCCTTGCCGCCAATGACGGGAAGACTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCGCCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCACGGGCAGCAGCACGACGTGATGCTCATGTGCTCAGAGTGCCACGCCACCTCCAGAAGCCAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.451
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCAAAAAGGGGAAAAGA
R:
TCTCTTGCACCAACATGGCAA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]