MmuEX0053384 @ mm10
Exon Skipping
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:35793523-35802989:-
Coord C1 exon
chr7:35802834-35802989
Coord A exon
chr7:35801438-35801528
Coord C2 exon
chr7:35793523-35795618
Length
91 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTTCTTGGCCACAGCTG
3' ss Score
7.21
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGCGCCGCCATCTTGGAGCCACGGCCGAGGAAGGGGCAAAAAGGGGGAAAGAGAGGGAAAGGAGTCGGGAGCGAGGCGGACGAGGGCGAGGGTACGGTGGGGTCCCGGCCGGCCAAAGGAGGCTCGCAGGAGCAGCAGCCCGCCGCCCGACCGCAG
Seq A exon
CTGGATTGTGAATATCGATCCAGGAGACTATCTGTTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAGGCAAGTTCCACTCTTGCTTCAAATGATGGGAAGGCTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCACCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCATGGGCAGCAGCATGACGTGATGCTCATGTGCTCGGAGTGCCACGCCACCTCCAGGAGCCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.457
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=14.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000205670fB19924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGCAAAAAGGGGGAAA
R:
TCTCTTGCACCAACATGGCAA
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types