HsaEX0073811 @ hg19
Exon Skipping
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32836514-32845863:+
Coord C1 exon
chr19:32836514-32836689
Coord A exon
chr19:32838151-32838244
Coord C2 exon
chr19:32843735-32845863
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTTTCGTTCTTGGCCACAGCTG
3' ss Score
8.55
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TCACGTGATCCGTCCCCAGCGCCGCCATTTTGGAGCTCCGGATGAGGAGGGGGAAACCGGGGGAAAAGAGGGAAAAGAGCCGGGAGAGAGGTGGGCAAGGACGAGGGCGAGGGCACGGCCGGGTCCTGGCTGGCCAAACGAGGCTCGCGGAAGCAGCAGCCGCCGCCTGACCGCAG
Seq A exon
CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG
Seq C2 exon
ATATGGAAGAAAGTAGCAGTGTTGCCATGTTGGTGCCAGATATTGGGGAACAGGAAGCTATACTGACTGCTGAAAGTATCATCAGTCCTTCATTGGAAATTGATGAACAAAGAAAAACTAAACCAGATCCATTAATCCATGTTATCCAGAAGTTAAGCAAGATAGTGGAAAATGAAAAGTCACAAAAATGTCTTTTAATTGGGAAGAAACGCCCACGTTCAAGTGCTGCAACACACTCTCTTGAAACCCAAGAACTTTGTGAGATTCCGGCTAAAGTAATCCAGTCACCTGCTGCTGATACTAGAAGGGCTGAGATGTCACAAACAAATTTTACCCCTGACACTCTTGCCCAGAATGAAGGGAAGGCTATGTCTTATCAGTGTAGCCTTTGTAAGTTTCTATCATCATCCTTTTCCGTGTTAAAAGATCATATTAAGCAACATGGTCAGCAAAATGAAGTGATACTGATGTGCTCAGAGTGCCATATTACATCTAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.340
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.2),PF0009621=zf-C2H2=PU(50.0=1.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGGAAAAGAGGGAAAAG
R:
CCCCAATATCTGGCACCAACA
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)