BtaEX0041454 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13181566-13182997:-
Coord C1 exon
chr11:13182926-13182997
Coord A exon
chr11:13182062-13182148
Coord C2 exon
chr11:13181566-13181634
Length
87 bp
Sequences
Splice sites
3' ss Seq
AATAATTCTACTTTTAAAAGCAA
3' ss Score
2.5
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAAGTCAGCGGGTTCTGTCAAATCTGTGGTAACAGTAGCTGCTAAAGGTAATAAAGCTTCAATCAAAACAG
Seq A exon
CAAAATCTAGTGGAAAGAAGTCTCTGGAAGTCAAAAAGGCTGGAATTGTCAAGAACAAAGACATTAGTAAATCTGTGAATGTACCAG
Seq C2 exon
AAAGCTCTGAAATGAAGACAAATGTGGAAGTCAAAACCACTGAAAATGGAGCTAAAGAAACTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.100 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCAGCGGGTTCTGTCAA
R:
ATAGTTTCTTTAGCTCCATTTTCAGT
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development