RnoEX0101602 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115650481-115653929:+
Coord C1 exon
chr4:115650481-115650531
Coord A exon
chr4:115653166-115653249
Coord C2 exon
chr4:115653861-115653929
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTAATTCTACTTTTAAAAGCAA
3' ss Score
3.45
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCAAATCTGGACAAATAAAGTCATCTACAGTCAAGGTGAACAAATCTGCAG
Seq A exon
CAAAATCTGGAAAGAAGTCTCTAGAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTACAATAAACCCGTGACTGTATCAG
Seq C2 exon
CAAACTCTGAAGTCAAGGCTAGTAGAGAAGACAAAGCCACTGGAAAGACTGCTGTGGAAACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.966 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATCTGGACAAATAAAGTCATCT
R:
TGAAGTAGTTTCCACAGCAGTCT
Band lengths:
119-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]