HsaEX6013870 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71398701-71400180:+
Coord C1 exon
chr2:71398701-71398772
Coord A exon
chr2:71399559-71399645
Coord C2 exon
chr2:71400112-71400180
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTGACTGTACTTTTACAAGCAA
3' ss Score
0.94
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAAATCAGCAAGTTCTGTAAAATCTGTGGTAACGGTAGCTGTTAAAGGTAATAAAGCTTCAATCAAAACAG
Seq A exon
CAAAATCTGGTGGAAAGAAGTCTCTAGAAGCCAAAAAGACTGGGAATGTCAAAAACAAAGACTCTAACAAACCTGTGACTATACCAG
Seq C2 exon
AAAACTCTGAAATAAAGACCAGTATTGAAGTCAAAGCCACTGAAAACTGTGCTAAAGAAGCTATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'62-58,'62-56,63-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=1.000 C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAAGTTCTGTAAAATCTGTGGT
R:
CTTCTTTAGCACAGTTTTCAGTGGC
Band lengths:
127-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains