MmuEX0053007 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83954711-83958252:+
Coord C1 exon
chr6:83954711-83954761
Coord A exon
chr6:83957509-83957592
Coord C2 exon
chr6:83958184-83958252
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTAATTCTACTTTTAAAAGCAA
3' ss Score
3.14
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCAAATCTGGACAAATAAAGTCATCTACGGTCAAGGTGAACAAATGTGCAG
Seq A exon
CAAAATCTGGAAAGAAGTCTCTAGAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTCCAATAAACCCGTGACTGTACCAG
Seq C2 exon
CAAACTCTGAAATCAAGGCTAGTTCAGAAGACAAAGCCACTGGAAAGAGTGCTGAAGAAAGTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016_MULTIEX3-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.983 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATCTGGACAAATAAAGTCATCT
R:
TGAAGGACTTTCTTCAGCACTCT
Band lengths:
119-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types