BtaEX0041549 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002370 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr18:45890809-45901037:-
Coord C1 exon
chr18:45900937-45901037
Coord A exon
chr18:45891657-45891783
Coord C2 exon
chr18:45890809-45890931
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTATCCATCATCATGGCAGGGC
3' ss Score
5.35
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACGCAGAGCCCGCGACACCCGTCTCGGTCACCCGCCTCTGAGGGCTCCTGCGTCCAGGGGCTGCGATGGCGGCGGCTGCGGCGCTGATGGACACAGCGCAG
Seq A exon
GGCTGTGTGACCTTTGAGGACGTGACCATTTACTTCTCCCCGGAGGAGTGGGGACTCCTTGATGAGGCTCAGAGACTCCTGTACTGTGATGTGATGCTGGAGAACTTTGCACTGATCGCCTCCCTTG
Seq C2 exon
GACTTGCATCTTTCAGGTCTCACATAGTTGCCCAGCTGGAGATGGGGGCAGAGCCCTGGGTGCCTGACCAAGCGGACATGACTTCAGCCATGGCAAGAGGGGTGTATAGAGGGCTTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002370-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=93.2)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCCGTCTCGGTCA
R:
GAGCCAAGCCCTCTATACACC
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development