BtaEX6000192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3693200-3711443:+
Coord C1 exon
chr1:3693200-3693318
Coord A exon
chr1:3698137-3698245
Coord C2 exon
chr1:3711385-3711443
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCTTTGCCCTGGATTTCAGGTT
3' ss Score
7.22
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
TGGCCATCAAGACTATGAACAAGGTTGCAAGTCATATCAATGAAATGCAGAAAATCCATGAGGAATTTGGGGCTGTGTTTGACCAGCTGATCGCTGAACAGACCGGTGAGAAAAAAGAG
Seq A exon
GTTGCAGATCTGAGCATGGGAGACCTGCTGTTGCATACCACCGTCATCTGGCCAAACCCGCCCGCCTCGCTGGGCAAGTGGAAAAAGGAGCCTGAATTGGCAGCGTTTG
Seq C2 exon
TCTTCAAAACTGCCGTGGTCCTTGTCTATAAAGATGGTACCAAACAGAAGAAGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839-'53-33,'53-32,54-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
PF0016924=PH=PU(24.1=86.5)
C2:
PF0016924=PH=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATCAAGACTATGAACAAGG
R:
AAGTTTCTTCTTCTGTTTGGTACCA
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]