DreEX6088261 @ danRer10
Exon Skipping
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25617961-25618721:-
Coord C1 exon
chr10:25618603-25618721
Coord A exon
chr10:25618399-25618507
Coord C2 exon
chr10:25617961-25618019
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTACTTTGACGCCAGGTT
3' ss Score
5.94
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
TGGCGATGAAAGCCATGAACAAAGTGGCCAGTCACATAAACGAGATGCAGAAGATTCACGAGGAATACGGAGCCGTGTTTGACCAACTCATCAGTGAACAGAGCTCAGAAAAGAAAGAG
Seq A exon
GTTGCTGATCTGTCAATGGGCGACCTCTTGTTGTATGACACAGTGGTCTGGATTAACCCACCGTCCTCTTTGATGAAGGGGAAGAGAGACCCAGAGCTGGCTGCCTTTG
Seq C2 exon
TTTTCAGAACAGCGGTTGTTTTTGTGTGTAAGGACTGCTCCAAGCAAAAGAAAAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAAGCCATGAACAAAGT
R:
GCTTGGAGCAGTCCTTACACA
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]