MmuEX0047309 @ mm9
Exon Skipping
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89793247-89805056:-
Coord C1 exon
chr16:89804938-89805056
Coord A exon
chr16:89800206-89800314
Coord C2 exon
chr16:89793247-89793419
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCCTCTGGTTTGCAGGTT
3' ss Score
9.32
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGCCATCAAGACTATGAACAAGGTCGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAGTTTGGTGCTGTGTTTGACCAGCTGATTGCTGAGCAGACGGGAGAGAAGAAAGAG
Seq A exon
GTTGCAGATCTGAGCATGGGTGACCTGCTCTTGCACACCAGCGTCATCTGGCTGAACCCACCCGCCTCACTGGGAAAGTGGAAAAAGGAGCCAGAATTAGCAGCCTTCG
Seq C2 exon
TTCCCCAGAGAGCAGAAAGGACTTTCTGAAGTCTGTGCATTCGATCCTGCGAGATAAACACAGAAGACAGCTCCTCAAAACGGAAAGCCTTCCGTCAGCCCAGCAGTATGTCCCCTTTGGAGGCAAGAGATTGTGTGCGCTTAAAGGCGCCAGGCCGGCCATGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489_MULTIEX1-23/26=22-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.120
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
PF0016924=PH=PU(24.1=86.5)
C2:
PF0016924=PH=PD(12.8=28.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACAAGGTCGCCAGTCAC
R:
GCACACAATCTCTTGCCTCCA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: