GgaEX6004202 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103796508-103799707:-
Coord C1 exon
chr1:103799589-103799707
Coord A exon
chr1:103797709-103797817
Coord C2 exon
chr1:103796508-103796566
Length
109 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTTTGTGATTGGCAGGTT
3' ss Score
8.16
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
TGGCCATAAAAACAATGAACAAAGTTGCCAGCCATATTAACGAAATGCAAAAAATCCATGAAGAATATGGGGCAGTGTTTGACCAACTCATAGCAGAACAAACAGGAGAGAAAAAAGAG
Seq A exon
GTTGCAGACCTTTCCATGGGGGATTTGCTCTTGCATAACACAGTGATATGGCTTAATCCTCCTGCTTCACTGGGGAAATGGAAGAAGGAACCTGAGCTGGCAGCATTTG
Seq C2 exon
TGTTCAAAACTGCTGTGGTCCTTGTGTACAAGGATGGTTCCAAACAGAAGAAGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'55-47,'55-46,56-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
PF0016924=PH=PU(23.5=83.8)
C2:
PF0016924=PH=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATAAAAACAATGAACAAAGT
R:
AAGTTTCTTCTTCTGTTTGGAACCA
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]