BtaEX6000889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57257603-57260192:+
Coord C1 exon
chr1:57257603-57257713
Coord A exon
chr1:57258644-57258760
Coord C2 exon
chr1:57260021-57260192
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTGTTGGTTTTTAGGTA
3' ss Score
11.49
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TGACTCTAAAGCCTGCCTGCAATGCCAGCTCCTTCGGGCAGCAGAGCCCTCTGATCTGTGACGGCTTCCAGGACTGTGAGGATGGCCAGGACGAGCAGAACTGCACTCGCA
Seq A exon
GTATTCCATGCAATGACAGAACTTTTAAGTGTGGCAATGATGTTTGCATTAGGAAACAAAATGCAAAATGTGATGGCAACGTGGACTGTCCGGATGGAACCGATGAAGAAGGCTGTC
Seq C2 exon
GCTGCAGCAGCAGTTCCCCCACCCTCCACCGCATCATCGGGGGCACTGACACCCAGGAGGGGGGTTGGCCGTGGCAAGTCAGCCTCCACTTCGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTCCTCTCTGCTGCCCACTGTTTCCATGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=55.3)
A:
PF0005713=Ldl_recept_a=WD(100=92.5)
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTAAAGCCTGCCTGCAA
R:
CCACTCCCTGGAGATGACTGA
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]