DreEX6094966 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21700496-21702710:-
Coord C1 exon
chr24:21702603-21702710
Coord A exon
chr24:21702410-21702526
Coord C2 exon
chr24:21700496-21700694
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTAATATGTTTGATGTGCAGAGA
3' ss Score
6
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CTAAACCTCCTAAATTCTGTGGTGGTACATCCCCTTTGCACCCATTATACATTTGTAATGGAGAGATGGACTGTTCCAGTGGTAAAGATGAGACAAACTGTACTCAGG
Seq A exon
AGACTAGCTGTTCTGGAGTCAGTTATCAGTGTGACAATGGAGCCTGCATTCTTAAGAAAAATGCAAAATGTGATGGCTTTCCTGACTGCTTTGACCAGAGCGATGAAAAGAACTGTG
Seq C2 exon
CCTGTGGCAAACCCACCCATGTAAAACGTGTATTAGATGGCACCAGCCCTCAGCAGCGTATTGTGGGTGGAGTCAATGCTGTGGAGGGGGAGTGGCCATGGCAGGTCAGCATGCATTTTTCTGGTCAGCTGTATTGTGGAGCTTCAGTCCTCTCTGATGTGTGGCTTATTTCCGCAGCACACTGTTACAGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.3=89.2)
A:
PF0005713=Ldl_recept_a=WD(100=95.0)
C2:
PF0008921=Trypsin=PU(20.0=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTACATCCCCTTTGCACC
R:
AGCCACACATCAGAGAGGACT
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]