HsaEX6057631 @ hg19
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111785239-111794339:+
Coord C1 exon
chr3:111785239-111785349
Coord A exon
chr3:111793143-111793259
Coord C2 exon
chr3:111794168-111794339
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTGTCCATTGTTAGGTA
3' ss Score
8.5
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TGAGCCCTCAACCTGCCTGCAATACCAGCTCCTTCAGGCAGCATGGCCCTCTCATCTGTGATGGCTTCAGGGACTGTGAGAATGGCCGGGATGAGCAAAACTGCACTCAAA
Seq A exon
GTATTCCATGCAACAACAGAACTTTTAAGTGTGGCAATGATATTTGCTTTAGGAAACAAAATGCAAAATGTGATGGGACAGTGGATTGTCCAGATGGAAGTGATGAAGAAGGCTGCA
Seq C2 exon
CCTGCAGCAGGAGTTCCTCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGAGGGGGGTTGGCCGTGGCAGGTCAGCCTCCACTTTGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTTTCTGCAGCCCACTGTTTTCATGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'18-24,'18-23,19-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(19.1=23.7),PF0005713=Ldl_recept_a=WD(100=55.3)
A:
PF0005713=Ldl_recept_a=WD(100=92.5)
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCTGCCTGCAATACC
R:
GCAGAAAGAAGCCACTCCCTG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)