GgaEX0022560 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91909972-91913051:+
Coord C1 exon
chr1:91909972-91910082
Coord A exon
chr1:91911210-91911326
Coord C2 exon
chr1:91912874-91913051
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCCACACAACTATTTCAGGTA
3' ss Score
8.27
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
TTGTCCCTGAGTGGAACTGTAACTCCAGCTTTGCGATACAGGATAACTTGCTTGTCTGCAATGGAGTAAATGATTGTGAGAATGGAGAAGATGAGCAGAACTGCACTGAAA
Seq A exon
GTATTCCTTGCACCAACCACACATTTAAGTGCAGGAATAACGTATGCATTAAGAAACAAAATGCAAAATGTGATGGGACTGTGGATTGTACTGATGGAAGTGATGAAAGCAGTTGTC
Seq C2 exon
GTTGCGGCAGCAGCAAGAATGGCAATCTCATCTCTCGGATCGTGGGTGGTACCAACAGTAAGGAAGGTGAATGGCCCTGGCAGGTCAGCCTCCATTTTGTGGGAGCTGCATACTGTGGGGCATCAGTGATATCAAAAGAATGGCTTGTATCTGCAGCTCACTGCTTTCAAGGGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(91.9=89.5)
A:
PF0005713=Ldl_recept_a=WD(100=92.5)
C2:
PF0008921=Trypsin=PU(20.0=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGCTTTGCGATACAGG
R:
GTGAGCTGCAGATACAAGCCA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]