BtaEX6003661 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141814625-141817569:-
Coord C1 exon
chr1:141817373-141817569
Coord A exon
chr1:141815506-141815602
Coord C2 exon
chr1:141814625-141814762
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTTACACATAGATT
3' ss Score
7.71
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTCCTGCGATGATTACATCCTACCCAAACACCACCCTGGCCACTCAGGGTCAAAAGAAGGAAATGAGCTGCACGGCTCACGGTGAGAAGCCCATCATAGTCCGCTGGGAGAAAGAGGACCGGATCATTAACCCTGAAATGGCCCGTTATCTCGTGTCCACCAAGGAGGTGGGGGAGGAGGTGATTTCTACTCTGCAG
Seq A exon
ATTTTGCCAACGGTAAGAGAAGATTCTGGCTTCTTCTCCTGTCACGCTATCAATTCATATGGGGAGGACCGTGGAATAATTCAGCTCACGGTGCAAG
Seq C2 exon
ACCACACAGAGCCCCCAGATCCTCCTGAAATTGAGATCAAGGATGTGAAGGCACGTACCATCACCCTCAGGTGGACCATGGGCTTTGACGGGAACAGCCCCATCACGGGCTATGACATTGAATGCAAAAATAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'10-10,'10-9,11-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.212 C2=0.574
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
PF0767911=I-set=PD(31.6=90.9)
C2:
PF0004116=fn3=PU(44.1=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCCATCATAGTCCGCT
R:
TGGTACGTGCCTTCACATCCT
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]