MmuEX6063647 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96936946-96939786:-
Coord C1 exon
chr16:96939590-96939786
Coord A exon
chr16:96937665-96937761
Coord C2 exon
chr16:96936946-96937074
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGCTTTGGTTGCAGATT
3' ss Score
10.39
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTCCTGCCATGATAACCTCTTACCCCAACACCACCCTGGCCACTCAGGGTCAAAGGAAGGAAATGAGCTGCACAGCCCATGGGGAGAAGCCCATCATTGTCCGCTGGGAGAAAGAGGACAGGATCATTAACCCTGAAATGGCCCGCTACCTGGTATCCACCAAGGAGGTGGGAGAGGAAGTGATATCTACGCTGCAG
Seq A exon
ATTTTGCCAACAGTGAGAGAAGATTCCGGTTTCTTCTCCTGCCATGCTATCAATTCATACGGGGAGGACCGTGGAATAATTCAACTCACAGTGCAAG
Seq C2 exon
AACCCCCAGATCCTCCCGAGATTGAGATCAAAGATGTCAAAGCTCGCACCATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTATGACATTGAATGCAAAAATAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.212 C2=0.386
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
PF0767911=I-set=PD(31.6=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCCCATCATTGTCCG
R:
TGATGGTGCGAGCTTTGACAT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: