GgaEX6004380 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107700978-107705911:-
Coord C1 exon
chr1:107705715-107705911
Coord A exon
chr1:107702604-107702700
Coord C2 exon
chr1:107700978-107701106
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCAAACCACCTATAGATT
3' ss Score
6.65
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTCCGGCTATGATAACTTCCTATCCGAACACCACCCTGGCAACACAAGGCCAAAAGAAGGAGATGAGCTGCACAGCACATGGAGAGAAACCCATCATAGTCCGCTGGGAGAAAGAGGATCGAATCATTAACCCTGAAATGTCTCGTTACCTTGTTTCCACCAAGGAAGTTGGAGACGAAGTGATCTCTACTCTACAG
Seq A exon
ATTTTGCCAACTGTGCGTGAAGATTCTGGCTTCTTTTCCTGCCATGCCATCAATTCTTATGGGGAGGATCGTGGAATAATTCAGCTCACTGTGCAAG
Seq C2 exon
AACCCCCTGACCCTCCTGAGATAGAAATCCGAGAGGTGAGAGCACGCAGCATTGCCCTCAGATGGACCATGGGATTTGATGGAAACAGCCCTATCACCGGCTATGATATTGAATGCAAGAACAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'18-19,'18-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.212 C2=0.318
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
PF0767911=I-set=PD(31.6=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCGCTGGGAGAAAGAGG
R:
ATCCCATGGTCCATCTGAGGG
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]