RnoEX6056696 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37129613-37132531:-
Coord C1 exon
chr11:37132335-37132531
Coord A exon
chr11:37130348-37130444
Coord C2 exon
chr11:37129613-37129741
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGCTTTGGTTGCAGATT
3' ss Score
10.39
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTCCTGCCATGATAACCTCTTATCCCAACACCACCCTGGCCACTCAGGGTCAAAGGAAGGAGATGAGCTGCACAGCACACGGGGAGAAGCCCATCATTGTCCGCTGGGAGAAAGAGGACAGGATCATTAACCCTGAAATGGCCCGTTACCTGGTGTCCACCAAGGAGGTGGGAGAGGAAGTGATTTCTACTCTGCAG
Seq A exon
ATTTTGCCAACAGTGAGAGAAGATTCCGGCTTCTTCTCCTGCCATGCTATCAATTCATATGGGGAGGACCGCGGAATAATTCAGCTCACGGTGCAAG
Seq C2 exon
AACCCCCAGACCCCCCCGAGATTGAGATCAAAGATGTCAAAGCCCGCACAATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTACGACATTGAGTGCAAAAATAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'21-14,'21-13,22-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.212 C2=0.364
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
PF0767911=I-set=PD(31.6=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCCCATCATTGTCCG
R:
ATTGTGCGGGCTTTGACATCT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]