DreEX6089443 @ danRer10
Exon Skipping
Gene
ENSDARG00000024865 | dscama
Description
Down syndrome cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-050310-7]
Coordinates
chr10:38975450-38978977:+
Coord C1 exon
chr10:38975450-38975664
Coord A exon
chr10:38978610-38978706
Coord C2 exon
chr10:38978849-38978977
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACCATTTATCCCTGTTTCAGATC
3' ss Score
10.99
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TTCCCGCCATGATCACATCGTATCCCAACAACTCGCTGGCCACGAAGGGAGAGAAAATCGAGATGAGCTGCAAGGCCCACGGTGAGAAGCCCATCATGGTGAGGTGGGAGAAGGAGGTGGAGAAGGAGAAGCAGTCGCACATGATCAACCCAGACATGTGGAGGCACACTGTGACCGTCAAGAACGTCGGCGATGAGGTCGTCTCCACCCTGCAG
Seq A exon
ATCTACCCAACGATGAGAGAGGATTCGGGCTTCTTCTCCTGTCATGCCATTAACTCTTACGGTGAAGACAGAGGAATCCTTCAGCTGACTGTTCAAG
Seq C2 exon
AGCCGCCAGAGCCTCCCAAAGTGGAAATTCGAGAGGTGAAGGAGAGGACCATCGCCCTCCGCTGGACCATGGGTTTTGATGGTAACAGTCTCATCACCGGCTACGATATTGAGTGCAAAAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024865-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.197 C2=0.333
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(68.3=95.8)
A:
PF0767911=I-set=PD(29.7=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGAGGTGGGAGAAGGAG
R:
CGATGGTCCTCTCCTTCACCT
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]