BtaEX6003714 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143214155-143218513:-
Coord C1 exon
chr1:143218418-143218513
Coord A exon
chr1:143214501-143214643
Coord C2 exon
chr1:143214155-143214307
Length
143 bp
Sequences
Splice sites
3' ss Seq
TATGCTGTCTTTTGTTGCAGGGA
3' ss Score
11.3
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACAAAGTGAAGCCAGTGTGTCTACCCAATCCAGGCATGATGCTGGAGCCAACTCAGTCCTGCTGGATTTCCGGGTGGGGGGCCACCTACGAGAAAG
Seq A exon
GGAAGACCTCAGATGACCTGAACGCGGCCAAGGTGCACCTCATTGAGCCCCGGAAGTGCAACAGCAAGTACATGTATGACAACCTCATCACGCCCGCCATGATCTGTGCAGGCTACCTGCGGGGCACCGTCGACTCCTGCCAG
Seq C2 exon
GGTGACAGTGGAGGTCCTCTGGTCACACTGAAGAGCAGTGTCTGGTGGCTGATTGGAGACACGAGCTGGGGGTCAGGCTGTGCCAAGGCGTACCGACCGGGAGTGTACGGGAACGTGACAGTGTTCACAGACTGGATCTATCAACAAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCAGTGTGTCTACCCA
R:
CCTCATTTGTTGATAGATCCAGTCTG
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]