RnoEX0092120 @ rn6
Exon Skipping
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38063915-38068086:-
Coord C1 exon
chr11:38067991-38068086
Coord A exon
chr11:38067173-38067315
Coord C2 exon
chr11:38063915-38065454
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTGATGCCTCTGTTGTTAGGGA
3' ss Score
4.72
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTGGACCTAGCCCAGGAGTGCTGGATTTCAGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GGAAGACCTCAGATGTGCTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGCAAATACATATACAACAACTTAATCACACCAGCCATGATCTGCGCCGGGTTCCTCCAGGGCTCTGTCGACTCTTGTCAG
Seq C2 exon
GCGAACAGCTAATCCACGTGGCTTTGTCCCCGACTTCCTTTGTCTTCAACAACCTTCTGCAAGAAAACCAAGGGGCGGATTTTCAACTTCCTGTGCACAATGTACCTTTTGAGATGATTCAAAGGGCCTTTCACTTTTATTAAACAGTGACTTATCTGACTGTGCTCCCTGGTCCTGTGAGGGCTTCAGTGCCCCACCCTCCAGGCTACTTCAGCAGCTCCTACCAGAAAGGATGACCAGATCCTGTTGGGTTTGGGCACATAGGGCCAAATACAGAAGAAGGTGGCACTCTCATGTTGAGACTTCTTTTTGGCTTATGCTCAGGCCTCTTTTGGATGAGTAAGGACTATGACCTCTGAGTAGTCTGATGACCTGAGAAGAGTAGGGAAGCCAGGCAGGGCCTTGGGCCAAGGTACAGGTACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTGGATTTCAGGGTGG
R:
CTGAAGTAGCCTGGAGGGTGG
Band lengths:
254-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]