MmuEX6063698 @ mm9
Exon Skipping
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97788630-97790110:-
Coord C1 exon
chr16:97790015-97790110
Coord A exon
chr16:97789203-97789345
Coord C2 exon
chr16:97788630-97788782
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTGATGCCTCTGTTGTTAGGGA
3' ss Score
4.72
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATCTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTAGACCTAGACCAGGAATGCTGGATTTCGGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GGAAGACCTCGGACGTGTTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGTAAATACATATACAACAACCTAATCACACCAGCCATGATCTGTGCCGGCTTCCTCCAGGGGTCTGTCGACTCTTGCCAG
Seq C2 exon
GGAGACAGTGGAGGGCCGCTGGTTACTTTGAAGAATGGGATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCACTCAGACCTGGAGTATACGGGAACGTGACGGTATTTACAGATTGGATCTACCAGCAAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-'20-19,'20-16,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGAAGCCAGTGTGTCTGC
R:
CCTCATTTGCTGGTAGATCCA
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: