DreEX0079996 @ danRer10
Exon Skipping
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38782952-38784424:+
Coord C1 exon
chr10:38782952-38783047
Coord A exon
chr10:38783595-38783737
Coord C2 exon
chr10:38784272-38784424
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCAAATGTGTTTCTTTAAAGGCT
3' ss Score
7.94
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CGAACATCAGGCCAGTCTGTCTGCCAAATAAAGGCATGAGCTTCACTGCGCAGCAGGACTGTTACGTCACTGGATGGGGAGCCCTGTTTAGTGGAG
Seq A exon
GCTCTTCCTCAGCAACCCTACAAGAGGCCAAAATCCAGCTGATCGACAGCACGATTTGTAACAGCCGGCCTGTGTATAACGGACTGATCACCGACACCATGATCTGTGCTGGAAAGCTGGCAGGCGGCGTGGACTCCTGTCAG
Seq C2 exon
GGGGACAGCGGTGGTCCTCTGGTCACCAATGTGCGCTCTCTCTGGTGGCTGCTGGGAGACACGAGCTGGGGTGATGGATGCGCTGTCAGAAACAAACCCGGAGTCTACGGAAATGTGACCTACTTCCTTGACTGGATCTACCAGCAAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACATCAGGCCAGTCTGTC
R:
CCGCATTTGCTGGTAGATCCA
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]