RnoINT0153376 @ rn6
Intron Retention
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38067173-38068086:-
Coord C1 exon
chr11:38067991-38068086
Coord A exon
chr11:38067316-38067990
Coord C2 exon
chr11:38067173-38067315
Length
675 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGATGCCTCTGTTGTTAGGGA
3' ss Score
4.72
Exon sequences
Seq C1 exon
ATGTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTGGACCTAGCCCAGGAGTGCTGGATTTCAGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GTAAGACTTTGGGTCGCCCAGGATGGGACATTGATTTCCACAGTGGGACCTCTTCATTTGAATCCCAGCTCGGTTATTCGGTGGCTTTTGGCTTTGGACAGTTTACATGTGCTATGTACCTTGCTTTTCCCATTCGATTAAACAAAAACCATCAAATTAGCCCTACCTAGCAACATAGGAAGAGGGCTTGGTATTTGGATGGACTGAGGGAGTATACTAGTTACTTTCTCATTCCTGTGACAAAATTCTTGACAAAAGTAACTCAAGGGAGTTACTTAACTGAAGGGAAGAAGGACTTATTGTCCACAGTTTGAAGGTGACGTCCATCATTGTAGGGAAGGCATGGTATCAAGAGCACAAGATGGCGGGTCACATCAATATATTCAGGATTCAGAAAGAAAGATGGATGCTAATAGTCAGACCACTTTCTCCTGCTTCTTCAGTCTAGGACCCAGCTATATTGAGAGCCTTTTCCCTCCTTGATGTACCCACTCTAGAAATTCCCTCATAGACATGCTCAGAGGTTTGTCTCCTAGGTGATTCTAGATGCCATCCATCAATGTTAACTATTACAGGGAGGGAGGAGGGGAGAGAGGTATGCGGTCATCTGCATGGAGTATGGGCCTCTTGAGGAAGATGTCCACAAGAGCTGCTGGCTGATGCCTCTGTTGTTAG
Seq C2 exon
GGAAGACCTCAGATGTGCTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGCAAATACATATACAACAACTTAATCACACCAGCCATGATCTGCGCCGGGTTCCTCCAGGGCTCTGTCGACTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976:ENSRNOT00000002713:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGAAGCCAGTGTGTCTGC
R:
GACAAGAGTCGACAGAGCCCT
Band lengths:
234-909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]