HsaINT0169701 @ hg19
Intron Retention
Gene
ENSG00000184012 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:11876]
Coordinates
chr21:42840323-42842670:-
Coord C1 exon
chr21:42842575-42842670
Coord A exon
chr21:42840466-42842574
Coord C2 exon
chr21:42840323-42840465
Length
2109 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACAAGTCTCCCTGTCCTTAGGGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
ACCTAGTGAAACCAGTGTGTCTGCCCAACCCAGGCATGATGCTGCAGCCAGAACAGCTCTGCTGGATTTCCGGGTGGGGGGCCACCGAGGAGAAAG
Seq A exon
GTGAGGCTGCTCCTGGGCACACAGGACTGCAGGGCCCACAGATGGAGCATTGGGTTCGGAAGTGGGAGGTCCAGGTTTTAATCCCAGTTCTACTACTCAATGACTGGATGACTTTGGTTGATTCCCCCAGTCCTTGTGCCTCAGTTTCTCCATCTGCTAAGTGGGAGAAATCCTGCCCAGCCTACCTAATACACTGTGTTCTTATCGTGATCACACAGAGCAGCATGTGGAATGGCTTTTGAAGTATCTGGGCCATACGAGTTTAGAGGTGCAGGATCTCCTGTGTTGCACTCATTGTGAGTTTAGAGCTGCCCTGGAGATCCCACCAAGGCCTGCGTGGCTGAGTGACAGGGGGCTTGGTGAGGACGGGCATCCTGGACCCATGGTGGCCACATCTAAGCCTGTCCTCTGCCCTGATAACCACAGAGAGAGGCTCTCTCCACCCACTTCCTTTGCAATCTGCATTTCTCTCTGACAGTCTTTCAAATGAAGGGAGCCTGGCTGCTTCATTTTTATGGAGGGTTGGAAGTGCTTAGTGGCAGGCACAAAGGTTCATTTTACATATTGTTTATATCCTTCTCAAAAGCGTCTAGGCCATACAGACAACAAATCCTTTCAAACAAGGGGAAAAGTACAAAGGTTGGGTGATTTCTGGGGAGCGTCAGGGAAGGTAGTGGGGGGCATCCTGGCTCCTCATCAGCAGAAACTTACTACAGTAGAGCCACAGGCTGGGCAAAAGACCTCATGGAATCCAAGATGAAGGGAATATCGACAAATATTTGTGCGCACCTGCACCTAGTACAGGCTGGGTGCTACTCAGGTGCTGGGAATGCAGAAGTGAACAGAGTAAGACAAATGTCTCTGCTGTCAGGAGCTTTACCTCTCTTCTGGATGTCGGTGGTGGGGACGGGGCAGGTGTGGTCAGACAGATGGGAGACAAACAACTGAGCGAGGTACTTCCAAACATCTGAGGGTGGGGATCACAAGGTCCCGGCTATTTTGAAGGGGTGGTCAGGAAAGGCTTCTCGGAAGAGGTGGCATTTGAGCTGAGACTCAAATGGCAAAAATGTGTACACATCAAAAAGGCTAGTGCATGTATCTTCAGGTGTGGTCAAGGGGCCAAGGAGGTGGGCTGGGGCCAGATTGCATAGGTCCTTGTGGATTATGGTGAAGACACCAGCTTCTCATCTGCTTGAGGTGGGGAGATCGTGAGCCGGGGAGTGCCATGATCTGGCAGCTGCGTGGGGAGTGGGGATGAATGGATGGAGACGAGGATGATGGTGACAAGTCCATTGCTGTGGTTCCTTGAGACAGGAAGCCAGCTCATAGCAGAGTGCGGGCGTGGATGTGAAGAGATGAGGGTACACTAGGGCTAGAGCCACCAGACTTACTGATGGGTTGCATGTCTGTGGGAGAGAGAGTGAGAAGTCAGGGACGATGGCTTTCCACTCTGTGGCTGAAGCCCCAGGGTGGCGGGTGGTGCCATTTTTCAAGCCAGGAAATATTGGTTGGTGAGAATTTGGGGTGGGAGAAGGTGTGACGGAGGGTTCTGGTTTTGCACACTAAGCCCACGGTGCCCAGAAGATGCCCGAGGGGAGGCAGCAAAGCGAGAGTGGGAAATGCAGAGGTGGCAAGTGCAGGCCGTGTCTTGAGAAGCTCTAATGTGCAGGGGAGCCGAGAAGCAGGCGGCCTAGGGAGGGTCACGTGTGCTCCAGAAGAGTGTGTGCATGCCAGAGGGGAAACAGGCGCCTGTGTGTCCTGGGTGGGGTTCAGTGAGGAGTGGGAAATTGGTTCAGCAGAACCAAGCCGTTGGGTGAATAAGAGGGGGATTCCATGGCACTGATAGAGCCCTATAGTTTCAGAGCTGGGAATTTCTTTCCCTGAAGCTGAACTCCAGAGCTGCATTCAGCACAGGCACCGCCAGTTGTAAGGAGAATCCAGGTTTCCCAGGAGAGGGGTTGGTGCTGGGATGAGCTGACCGGGGCAGGGCTGGAAAATAGGGCTGTGACCATCTGTGTAGTGCGTGTGGAGGTCTCAGGGAGGGAAGTGTGCTCTCCCTGCGAGAGCTGCAGGCAACACTGGGAGCTCAACAAGTCTCCCTGTCCTTAG
Seq C2 exon
GGAAGACCTCAGAAGTGCTGAACGCTGCCAAGGTGCTTCTCATTGAGACACAGAGATGCAACAGCAGATATGTCTATGACAACCTGATCACACCAGCCATGATCTGTGCCGGCTTCCTGCAGGGGAACGTCGATTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184012-TMPRSS2:NM_001135099:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)