BtaINT0150415 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143214501-143218513:-
Coord C1 exon
chr1:143218418-143218513
Coord A exon
chr1:143214644-143218417
Coord C2 exon
chr1:143214501-143214643
Length
3774 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATGCTGTCTTTTGTTGCAGGGA
3' ss Score
11.3
Exon sequences
Seq C1 exon
ACAAAGTGAAGCCAGTGTGTCTACCCAATCCAGGCATGATGCTGGAGCCAACTCAGTCCTGCTGGATTTCCGGGTGGGGGGCCACCTACGAGAAAG
Seq A exon
GTGAGTCTCCCCGCCCAGGGTCTGCAGGTCCCATGAATCAGAGCATGGGTTCAGAAGTGGGAGATCTAGGTTTTGATCTTGGTTCTACCACTGAATGATTGGATGATTTTTGGGTGATTCACCCAGGCTGTTTGCCTCAGGTTCTCTACATGTTAGATGGGAAAATCCTACCTGCCCTACCTACCACAGTGCCCTGATTAAGGTCAAATGCAAAGACTTCCCTAGTGGTCCAGTGGTTAAAACTTCATTTTCCAGTGCAAGGGGTGTGGGTTCAATCCCTCATCAGGTAGCTAAGATCTCACATGCCTCGTGGTCAAAAAACCAAATATAAGCAGAAACAATACTGTAACAAATTCAATAAAGGCTTTTTAAAAACTGGTCCACATCAAAAAATTAAAAAAACAAATCAAGTGGAACAGTGAGTGGAAACTGCGTTTTGGAGTGTAGAGGGCACCTAAACGTGAGAGGCACATGGCCCACCATGTTCAAGTCACAGAGTCATTAACGGGCTGCCTGGAAGTCTGCTGGCCTTTGATGCGAGGATAATGGTCTCAGTGAGGATGGGCCTGTGTGACTGGCAGCGACTGGCTGCAAGTCATCAAAGCCTAGTCCTCCTGCCCTGACCACACAGAGGGGAAGAGGCTCTAGACTCTCCTGACGCAGGCTGACCCTGCTGCCTTCAGTTATAATTTGGTTTCATGTCTGATAACCTTTTTCAAATGAAGAGATCCAGGCTGTTTCCTTTATATGGAGCATTGGATGTGCTTCAGTTCAGTTCAGTCACTCAGTCCTGTCTGACTCTTTGCAACCCCATGGACTGCAGCACACCAGGCTTCCCTGTCCATCACCAATTGCCAGGGCTTGCTCAAACTCACGTCCCTTGAGTTGGTGATGTCATCCAACATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCTAAGGAGTCAGTTCTTCACATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTTGATTGACACTCAAGAGTCTTCTCCAATACCACTGTCCAAAAGCATCAGTTCTTCCATGCTCAGCTTTCTTTATAGTCCAATTATCACATCCATACATAACTACTGGAAAAAACATATCTTTAACTAGATGTACCTTTGTTGGCAAAATAATGTCTCTGCTTTTTAATATGCTATCTAGGGTGGTCATAGCATTTCTCCCAAAGAGCAAGCGTCTTTTAATTTCATGGCTGCATTCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAGTCTCTTACTGTTTCCATTGTTTGTCCATCTATTTGCCTTGAAGTGATGGGACTGGATGCCATGATCTTAGTTTTCTGAATGTTGAGTTTTAAGCCAACCTTTTCACTCTCCTTTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTTATCTGCATATCTGAGGTTTTTGATATTTCTCCCAGCAATCTTGATTCTAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCATGATGTACTCTGCATATAACTTAAATAAGCAGGGTGACAGTATACAGCCTTGACGTACTCCTTGCATACAGATTTCTCAGGAGGCAGATAAGGTGGTTTGGTATTCCCATCTCTTTAAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAATCTTTGGAGTAGTCAATAAAGCAGAATTAGATGTTTTTCTGGAACTCTGTTGCTTTTTCAGTGATCCAAAGAAGGTTGGCAATTTGATCTCAGGTTCCTTTGCCTTTTCTAAATCCAACTTGAACATCTGCAAGTTCATGGTTCATGCACTGTTTAAGCTTGGCTTGGAGAATTTTGAGCATTACTTTGCTAGTGTGTGCAATGAGTGCAATTGTGTGATAGTTTGAACAATCTTTGGCATTGCCTTTCTTTGGAATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTATGTGGATGTGCTTAGTGGTACGTTTATATTAATATATTGTTTACATCCTTCCAGAAGTATTTAGGGCACACCTACAAGGAATTCTTTAAAGCAGGGGTCTCAAACCCCAGGCCATGGATTGGTGCTAGTCAGTGATCTGTTAAGAACCAGGCCACACAGGAGGAGGTGAGCAGCGGGTGAGCAAGCAAAGCTTCATCGTATTTATAGCTGCTCCCCATTGCTTTCATTACCACATTATCACAATGTTCTAATAATAGAAACAAAGGGCACAATAAATGTAATGCACTTGAATCATCCTGAAACCATCCCCCCACCTCCCTGGTCCATGGAAAAACCGCCTTCTACGAAACTGGCCCCCAGCGCCAGGAAGGTTGGGGACCACTGGTTTAAAGCGAGGTGAATAGTACATGGGTGGGGCGACTTAGAGAAAGAAGGGAGAGCTGGCAACTGGGCTGAGTATCTTGGCATCTGGACGAGAGAAGCTCCTGGGTTGATCCTTCCAGTTGTGAGCAAGTTTCCTCAGTAGCCAAGACCAAAGGAAAAGTCAGCCATGATCTGTGGGGCACCTTCCAAGGGCTGGGAGAGTAACAGTGAGCAAACTAAAACAAAACCTCTGCCTGCAGGAGCTTCGCATTCTCCTGTGGGCGCTGGGGGCAGATTGTGCTCAGATAGGAAATGAGAAACTAGGTGCTTTCAAACAGTGGAGGCTTGTCACGGTGAGAGGTGGTCAGGGAGGGCTTCCCGGAAGAGGGGACATTTGAGCTGAAATCAGCATGACAAGAATGTCTTAGGAACAGAAGGGCCAGTGTGGCCAGGGCATGATGAACCAGGAGCGAGGGGGCAGTCTGGAGTCAGGTTGCATAGGGTATTGTAGGCTATGATGATAGCACTGGCTTCTAATCCAAGTGGGCCATGGAGCTGCTAGGGAGTGACATGGTTGGATGGCTAAGTAGGGACTCACAGAAAAGGTGACAGCATGGTGAGGAGACCACTGCCACATCCTGCGAGACAAGAAGGTTGCCAGACCAGGGAGGTGGGTGTGGGGGTAGGGGCAGAGCCACCAAATCTGTTGATCGATGGAGTGTCACGGGAAAGTGAGCAGTCTCGGGGGGGCCTGATTCGTGCTCGTGATCTGAGCCCCATGGTGGGGCATGGGGCCACTTCCCAAGTTGAGGAGGCTCAAGTGGCATGGCTTAGGGCGGATAAGCACTCCAGGAGAGGCTCTGCTTCAGCCCCCGAGGCCACAGAGCCTAGAAAACCTCTGTGTAGCAGGTGGGTGATGGAGATAGCACAGACCTGCAAGTGATTGGTCGCTCCCACATGCAGGGAGCGAGGGCAGGCAGTCAGGAGTGGAGCAGCGCGTGGGCTTGAGAAAGCTTAGGGTGCTTGAGGTGGAAACACAGGAGTTTCTGGTGTCAGCCTGGGAACTGTCCAGAGGGGAGAGATCGATGGAGGAGGAGAAGTGATCCCAGGGAACCACGTGGCTGGGCCATGAGCGGGTGACTCTAGGACACAGTTGGAGCTTGGTCCTCAGCCCAGAGGCAGGTAGTCCTCTCCAAACATAATACAGAGCCACTTTAAACGCACGCCTCTCAGCAGTTGAAAGGTACCTGGGTTCCCCAGGAGCAGGCTTGGTAGGAGTGGCATGGCCGTATGTCCACGTGTCCAGGAGGGAGACCAGGCTTCCTGTGAAAGCTATGCTGTCTTTTGTTGCAG
Seq C2 exon
GGAAGACCTCAGATGACCTGAACGCGGCCAAGGTGCACCTCATTGAGCCCCGGAAGTGCAACAGCAAGTACATGTATGACAACCTCATCACGCCCGCCATGATCTGTGCAGGCTACCTGCGGGGCACCGTCGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132:ENSBTAT00000012036:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development