MmuINT0162705 @ mm10
Intron Retention
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97567596-97568503:-
Coord C1 exon
chr16:97568408-97568503
Coord A exon
chr16:97567739-97568407
Coord C2 exon
chr16:97567596-97567738
Length
669 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTGATGCCTCTGTTGTTAGGGA
3' ss Score
4.72
Exon sequences
Seq C1 exon
ATCTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTAGACCTAGACCAGGAATGCTGGATTTCGGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GTGAGGCTTTGGGTCACACAGGATGGGACACTGATTTCCACAGTGGGACCCCTTCATTTGAATCCCAGTTCAGTTATTCAGTGGTTTCTGGCTTTGGACAATTTACATGAGCTATGTATCTTGCTTTCCCCATTCGATTACATCATCAAATTAACCCTACCTAGCACATAGGAAGAGAGCTTGACATTTTGATGGACTGAGGGAGTATACTAGTTACTTCCTCATTCCTGTGACAAAATTCTTGACAAAAGTAACTCAAGGGAGTTCCTTAGCTGAAGGGAAGAAGGATTTATTGTCCACAGTTTGAAGGTGCCATCCATCATTTGGGAAAGGCATGGTATCAGGAGCACATGATGTCAGGTCACATCTATATATTCAGGACTCAGGAAGAGAGAGATGAATTCTGATACTCATCTCACTTTCTCCTTTTTATTCAGTCTTGGACCCAGCTAAATTTAGAGCATTTTCCCTCCTTGATCCACCCACTCTAGACATCCCCTCATAGACATGCTCAGAGGTTTGTCTCCTAGTTGATTCTAGAGCCTGTCAATCAATGTTAACCATTACAGGGAGGGAGGAGGGGAGAGTGGTATTCGATCATCTGCATGGAATATGGGCCTCTTGAGGAAGATGTCCACAAGAGCTGCTGGCTGATGCCTCTGTTGTTAG
Seq C2 exon
GGAAGACCTCGGACGTGTTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGTAAATACATATACAACAACCTAATCACACCAGCCATGATCTGTGCCGGCTTCCTCCAGGGGTCTGTCGACTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385:ENSMUST00000000395:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTAGTGAAGCCAGTGTGTCTG
R:
GTCGACAGACCCCTGGAGG
Band lengths:
230-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types