RnoEX0092121 @ rn6
Exon Skipping
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38063915-38068086:-
Coord C1 exon
chr11:38067991-38068086
Coord A exon
chr11:38066594-38066746
Coord C2 exon
chr11:38063915-38065454
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAACTTGCTGTGTTCCCCAGGGA
3' ss Score
9.14
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATGTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTGGACCTAGCCCAGGAGTGCTGGATTTCAGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GGAGACAGTGGAGGGCCCCTGGTTACTTTGAAGAATGAAATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCATACAGACCTGGAGTATACGGGAATGTGACAGTATTTACAGATTGGATCTACCAGCAAATGAGG
Seq C2 exon
GCGAACAGCTAATCCACGTGGCTTTGTCCCCGACTTCCTTTGTCTTCAACAACCTTCTGCAAGAAAACCAAGGGGCGGATTTTCAACTTCCTGTGCACAATGTACCTTTTGAGATGATTCAAAGGGCCTTTCACTTTTATTAAACAGTGACTTATCTGACTGTGCTCCCTGGTCCTGTGAGGGCTTCAGTGCCCCACCCTCCAGGCTACTTCAGCAGCTCCTACCAGAAAGGATGACCAGATCCTGTTGGGTTTGGGCACATAGGGCCAAATACAGAAGAAGGTGGCACTCTCATGTTGAGACTTCTTTTTGGCTTATGCTCAGGCCTCTTTTGGATGAGTAAGGACTATGACCTCTGAGTAGTCTGATGACCTGAGAAGAGTAGGGAAGCCAGGCAGGGCCTTGGGCCAAGGTACAGGTACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTGGATTTCAGGGTGG
R:
CTGAAGTAGCCTGGAGGGTGG
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]